QTL Accession ID | AQJ006 | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||||
Trait Symbol | PNNB | ||||||||||||
Trait Name | panicle number | ||||||||||||
Published Symbol | |||||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||||
Chromosome | 6 | ||||||||||||
Comments | QTL identified from aerobic experiments of 1980-1985. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 26,554,756-29,028,429 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 6 | 118.9-133.5 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQJ006 | 6 | 118.9 | 133.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | CDO544 | RFLP | Avena sativa | qtl_marker |
To | RM528 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM30 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM340 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG653 | RFLP | Oryza sativa | qtl_marker |
To | RM343 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM400 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000152) | Lafitte-H-R et al., 2002 (IAGP) |
Plant Structure | (PO:0009049) | Lafitte-H-R et al., 2002 (SM) |
Plant Growth and Development Stage | (PO:0007041) | Lafitte-H-R et al., 2002 (SM) |
(PO:0007130) | Lafitte-H-R et al., 2002 (SM) | |
Growth Stage | (GRO:0007044) | Lafitte-H-R et al., 2002 (SM) |
(GRO:0007140) | Lafitte-H-R et al., 2002 (SM) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lafitte-H-R et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 26,554,756 | 29,028,429 | ~160K SNPs x 20 accessions (McNally 2... | 1,731 | Search for SNPs |
chr6 | 26,554,756 | 29,028,429 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
chr6 | 26,554,756 | 29,028,429 | Huang X, et al, Nat Genetics 2010 Nov... | 4,444 | Search for SNPs |
chr6 | 26,554,756 | 29,028,429 | RiceDiversity 44K SNP assay, 34 trait... | 4,444 | Search for SNPs |
chr6 | 26,554,756 | 29,028,429 | RiceDiversity 44K SNP assay, 34 trait... | 320 | Search for SNPs |