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Oryza sativa QTL "AQJ002" (plant height)
| QTL Accession ID | AQJ002 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | PTHT | ||||
| Trait Name | plant height | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||
| Chromosome | 1 | ||||
| Comments | QTL identified from aerobic experiments of 1980-1985. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 34,032,918-40,700,598 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 1 | 154.8-188.7 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQJ002 | 1 | 154.8 | 188.7 |
Associated Markers (12)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM226 | SSR | Oryza sativa | qtl_marker |
| To | RZ730 | RFLP | Oryza sativa | qtl_marker |
| To | RM265 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM315 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM472 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM431 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM104 | SSR | Oryza sativa | qtl_marker |
| To | OSR23 | SSR | Oryza sativa | qtl_marker |
| To | RG810 | RFLP | Oryza sativa | qtl_marker |
| To | RM486 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RZ801 | RFLP | Oryza sativa | qtl_marker |
| To | RM529 | SSR | Oryza sativa Japonica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000207) | Lafitte-H-R et al., 2002 (IAGP) |
| Plant Structure | (PO:0009006) | Lafitte-H-R et al., 2002 (SM) |
| Plant Growth and Development Stage | (PO:0007130) | Lafitte-H-R et al., 2002 (SM) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007140) | Lafitte-H-R et al., 2002 (SM) |
| (GRO:0007139) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Lafitte-H-R et al., 2002 (SM) |
Database Cross-References (1)
SNPs (24,512)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 34,032,918 | 40,700,598 | ~160K SNPs x 20 accessions (McNally 2... | 4,737 | Search for SNPs |
| chr1 | 34,032,918 | 40,700,598 | '1536 chip' - 1311 SNPs x 395 rice ac... | 22 | Search for SNPs |
| chr1 | 34,032,918 | 40,700,598 | Huang X, et al, Nat Genetics 2010 Nov... | 9,423 | Search for SNPs |
| chr1 | 34,032,918 | 40,700,598 | RiceDiversity 44K SNP assay, 34 trait... | 9,423 | Search for SNPs |
| chr1 | 34,032,918 | 40,700,598 | RiceDiversity 44K SNP assay, 34 trait... | 907 | Search for SNPs |
