QTL Accession ID | AQHR032 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | PTHT | ||||
Trait Name | plant height | ||||
Published Symbol | qPH-2-3 | ||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||
Chromosome | 2b | ||||
Comments | The conditional QTL was detected by comparing S2/S1 phenotypic data (S2---30 days after transplanting, S1---15 days after transplanting). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 34,652,316-35,136,068 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 2b | 31.8-37.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQHR032 | 2b | 31.8 | 37.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM213 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM208 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM240 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM207 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000207) | Yang-G et al., 2006 (IAGP) |
Species Ontology | (GR_tax:013681) | Yang-G et al., 2006 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 34,652,316 | 35,136,068 | ~160K SNPs x 20 accessions (McNally 2... | 412 | Search for SNPs |
chr2 | 34,652,316 | 35,136,068 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
chr2 | 34,652,316 | 35,136,068 | Huang X, et al, Nat Genetics 2010 Nov... | 702 | Search for SNPs |
chr2 | 34,652,316 | 35,136,068 | RiceDiversity 44K SNP assay, 34 trait... | 702 | Search for SNPs |
chr2 | 34,652,316 | 35,136,068 | RiceDiversity 44K SNP assay, 34 trait... | 94 | Search for SNPs |