QTL Accession ID | AQHQ025 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PPDSN |
Trait Name | photoperiod sensitivity |
Published Symbol | Dtf6 |
Trait Synonym(s) | |
Trait Category | Development |
Chromosome | 6 |
Comments | "The degree of photoperiod sensitivity of each RIL was calculated as the delay in days to flowering under 14 h photoperiod, compared to the days to flowering under 10 h photoperiod (DTF 14 h minus DTF 10 h)." |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 9,536,259-24,455,212 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Mor/CO39 QTL 1994 | BNL6.32 | 6 | 34.6-60.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQHQ025 | 6 | 34.6 | 60.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG64 | RFLP | Oryza sativa | qtl_marker |
To | RG172 | RFLP | Oryza sativa | qtl_marker |
To | RZ192 | RFLP | Oryza sativa | qtl_marker |
To | RG162 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000229) | Maheswaran-M et al., 2000 (IAGP) |
Species Ontology | (GR_tax:013681) | Maheswaran-M et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 9,536,259 | 24,455,212 | ~160K SNPs x 20 accessions (McNally 2... | 6,742 | Search for SNPs |
chr6 | 9,536,259 | 24,455,212 | '1536 chip' - 1311 SNPs x 395 rice ac... | 41 | Search for SNPs |
chr6 | 9,536,259 | 24,455,212 | Huang X, et al, Nat Genetics 2010 Nov... | 33,407 | Search for SNPs |
chr6 | 9,536,259 | 24,455,212 | RiceDiversity 44K SNP assay, 34 trait... | 33,407 | Search for SNPs |
chr6 | 9,536,259 | 24,455,212 | RiceDiversity 44K SNP assay, 34 trait... | 1,331 | Search for SNPs |