QTL Accession ID | AQHP026 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | RTSHRO |
Trait Name | root to shoot ratio |
Published Symbol | |
Trait Synonym(s) |
root to shoot dry weight ratio root/shoot ratio |
Trait Category | Vigor |
Chromosome | 4 |
Comments | At 38 days-after-sowing (DAS), the shoot and the roots from each 15-cm section were placed in envelopes and dried at 60C for 2 days. Dry weights were used to compute dry root weight/dry shoot weight (R/S). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 8,610,617-8,611,256 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Mor/CO39 QTL 1994 | BNL6.32 | 4 | 82.9-82.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQHP026 | 4 | 82.9 | 82.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG190 | RFLP | Oryza sativa | qtl_marker |
To | RG449 | RFLP | Oryza sativa | qtl_marker |
To | RZ69 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000278) | Champoux-M-C et al., 1995 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
(PO:0009006) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Champoux-M-C et al., 1995 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 8,610,617 | 8,611,256 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
chr4 | 8,610,617 | 8,611,256 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr4 | 8,610,617 | 8,611,256 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr4 | 8,610,617 | 8,611,256 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr4 | 8,610,617 | 8,611,256 | RiceDiversity 44K SNP assay, 34 trait... | 0 |