QTL Accession ID | AQHJ006 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SRTLG |
Trait Name | seminal root length |
Published Symbol | RAL |
Trait Synonym(s) | |
Trait Category | Anatomy |
Chromosome | 9 |
Comments | The length of the main root axis (root axis length: RAL) was measured to evaluate primary root length and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 17,719,660-17,719,852 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JUT Akihi/IRAT109 QTL 2004 | BNL6.32 | 9 | 68.5-105 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQHJ006 | 9 | 68.5 | 105 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM257 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM278 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM566 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000586) | Horii-H et al., 2006 (IAGP) |
Plant Structure | (PO:0000046) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007134) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Horii-H et al., 2006 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr9 | 17,719,660 | 17,719,852 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr9 | 17,719,660 | 17,719,852 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr9 | 17,719,660 | 17,719,852 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr9 | 17,719,660 | 17,719,852 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr9 | 17,719,660 | 17,719,852 | RiceDiversity 44K SNP assay, 34 trait... | 0 |