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Oryza sativa QTL "AQHH053" (elongation ability)
| QTL Accession ID | AQHH053 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | ELAB |
| Trait Name | elongation ability |
| Published Symbol | |
| Trait Synonym(s) | |
| Trait Category | Abiotic stress |
| Chromosome | 1 |
| Comments | QTL was detected based on the phenotypic data from Test 1 experiment (greenhouse). Plant survival percentage under submergence was measured to evaluate submergence sensitivity and used for QTL analysis. The submergence tolerant allele came from Jalmagna. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 32,060,549-32,061,040 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR74/Jalmagna RI AFLP/RFLP QTL 2001 | BNL6.32 | 1 | 92.2-92.2 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQHH053 | 1 | 92.2 | 92.2 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG541 | RFLP | Oryza sativa | qtl_marker |
| To | RZ154-3 | RFLP | Oryza sativa | qtl_marker |
| To | RZ730 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000170) | Sripongpangkul-K et al., 2000 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007198) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Sripongpangkul-K et al., 2000 (SM) |
Database Cross-References (1)
SNPs (2)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 32,060,549 | 32,061,040 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
| chr1 | 32,060,549 | 32,061,040 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr1 | 32,060,549 | 32,061,040 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
| chr1 | 32,060,549 | 32,061,040 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
| chr1 | 32,060,549 | 32,061,040 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
