QTL Accession ID | AQHH032 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | ELAB |
Trait Name | elongation ability |
Published Symbol | |
Trait Synonym(s) | |
Trait Category | Abiotic stress |
Chromosome | 6 |
Comments | QTL was detected based on the phenotypic data from Test 1 experiment (greenhouse). Plant height increment after flooding (PHI) was measured to evaluate plant elongation ability and used for QTL analysis. This locus was found to have significant interaction with another locus, AQHH031. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 6,927,624-6,928,661 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR74/Jalmagna RI AFLP/RFLP QTL 2001 | BNL6.32 | 6 | 209.6-225.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQHH032 | 6 | 209.6 | 225.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ667 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000170) | Sripongpangkul-K et al., 2000 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007198) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Sripongpangkul-K et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 6,927,624 | 6,928,661 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
chr6 | 6,927,624 | 6,928,661 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 6,927,624 | 6,928,661 | Huang X, et al, Nat Genetics 2010 Nov... | 6 | Search for SNPs |
chr6 | 6,927,624 | 6,928,661 | RiceDiversity 44K SNP assay, 34 trait... | 6 | Search for SNPs |
chr6 | 6,927,624 | 6,928,661 | RiceDiversity 44K SNP assay, 34 trait... | 0 |