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Oryza sativa QTL "AQHH018" (plant height)
| QTL Accession ID | AQHH018 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | PTHT | ||||
| Trait Name | plant height | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Vigor | ||||
| Chromosome | 10 | ||||
| Comments | QTL was detected based on the phenotypic data from Test 1 experiment (greenhouse). This locus was found to have significant interaction with another locus, AQHH017. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 12,900,279-12,903,065 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR74/Jalmagna RI AFLP/RFLP QTL 2001 | BNL6.32 | 10 | 0-46.3 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQHH018 | 10 | 0 | 46.3 |
Associated Markers (1)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RZ892 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000207) | Sripongpangkul-K et al., 2000 (IAGP) |
| Plant Structure | (PO:0009006) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Sripongpangkul-K et al., 2000 (SM) |
Database Cross-References (1)
SNPs (2)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr10 | 12,900,279 | 12,903,065 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
| chr10 | 12,900,279 | 12,903,065 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr10 | 12,900,279 | 12,903,065 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
| chr10 | 12,900,279 | 12,903,065 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
| chr10 | 12,900,279 | 12,903,065 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
