QTL Accession ID | AQHG018 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | ZNSN |
Trait Name | zinc sensitivity |
Published Symbol | Zdm7 |
Trait Synonym(s) | zinc deficiency |
Trait Category | Abiotic stress |
Chromosome | 7 |
Comments | Shoot dry weight (ShDM) per plant was measured to evaluate zinc sensitivity and used for QTL analysis. QTL was detected based on the phenotypic data from the dry season of 2005. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 24,085,141-24,085,506 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR74/Jalmagna RI AFLP/RFLP QTL 2001 | BNL6.32 | 7 | 82.2-90.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQHG018 | 7 | 82.2 | 90.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG650 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000351) | Wissuwa-M et al., 2006 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007309) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wissuwa-M et al., 2006 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 24,085,141 | 24,085,506 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr7 | 24,085,141 | 24,085,506 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr7 | 24,085,141 | 24,085,506 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr7 | 24,085,141 | 24,085,506 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr7 | 24,085,141 | 24,085,506 | RiceDiversity 44K SNP assay, 34 trait... | 0 |