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Oryza sativa QTL "AQHG009" (zinc sensitivity)
| QTL Accession ID | AQHG009 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | ZNSN |
| Trait Name | zinc sensitivity |
| Published Symbol | Zmt12 |
| Trait Synonym(s) | zinc deficiency |
| Trait Category | Abiotic stress |
| Chromosome | 12 |
| Comments | Shoot dry weight (ShDM) per row was measured to evaluate zinc sensitivity and used for QTL analysis. QTL was detected based on the phenotypic data from the wet season of 2004. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 23,603,156-23,775,487 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI IR74/Jalmagna RI AFLP/RFLP QTL 2001 | BNL6.32 | 12 | 143.4-151.9 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQHG009 | 12 | 143.4 | 151.9 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG543 | RFLP | Oryza sativa | qtl_marker |
| To | RG81 | RFLP | Oryza sativa | qtl_marker |
| To | RZ76 | RFLP | Oryza sativa | qtl_marker |
| To | CDO344 | RFLP | Avena sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000351) | Wissuwa-M et al., 2006 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| (PO:0009011) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
| (PO:0009012) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007309) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Wissuwa-M et al., 2006 (SM) |
Database Cross-References (1)
SNPs (963)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr12 | 23,603,156 | 23,775,487 | ~160K SNPs x 20 accessions (McNally 2... | 84 | Search for SNPs |
| chr12 | 23,603,156 | 23,775,487 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
| chr12 | 23,603,156 | 23,775,487 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
| chr12 | 23,603,156 | 23,775,487 | Huang X, et al, Nat Genetics 2010 Nov... | 426 | Search for SNPs |
| chr12 | 23,603,156 | 23,775,487 | RiceDiversity 44K SNP assay, 34 trait... | 426 | Search for SNPs |
| chr12 | 23,603,156 | 23,775,487 | RiceDiversity 44K SNP assay, 34 trait... | 26 | Search for SNPs |
