QTL Accession ID | AQHG006 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | ZNSN |
Trait Name | zinc sensitivity |
Published Symbol | Zmt12 |
Trait Synonym(s) | zinc deficiency |
Trait Category | Abiotic stress |
Chromosome | 12 |
Comments | Plant mortality was measured to evaluate zinc sensitivity and used for QTL analysis. QTL was detected based on the phenotypic data from the wet season of 2004. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 23,603,156-23,775,487 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR74/Jalmagna RI AFLP/RFLP QTL 2001 | BNL6.32 | 12 | 143.4-151.9 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQHG006 | 12 | 143.4 | 151.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG543 | RFLP | Oryza sativa | qtl_marker |
To | RG81 | RFLP | Oryza sativa | qtl_marker |
To | RZ76 | RFLP | Oryza sativa | qtl_marker |
To | CDO344 | RFLP | Avena sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000351) | Wissuwa-M et al., 2006 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007309) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wissuwa-M et al., 2006 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 23,603,156 | 23,775,487 | ~160K SNPs x 20 accessions (McNally 2... | 84 | Search for SNPs |
chr12 | 23,603,156 | 23,775,487 | '1536 chip' - 1311 SNPs x 395 rice ac... | 1 | Search for SNPs |
chr12 | 23,603,156 | 23,775,487 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 23,603,156 | 23,775,487 | Huang X, et al, Nat Genetics 2010 Nov... | 426 | Search for SNPs |
chr12 | 23,603,156 | 23,775,487 | RiceDiversity 44K SNP assay, 34 trait... | 426 | Search for SNPs |
chr12 | 23,603,156 | 23,775,487 | RiceDiversity 44K SNP assay, 34 trait... | 26 | Search for SNPs |