QTL Accession ID | AQHG001 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | ZNSN |
Trait Name | zinc sensitivity |
Published Symbol | Zbz1a |
Trait Synonym(s) | zinc deficiency |
Trait Category | Abiotic stress |
Chromosome | 1 |
Comments | Leaf bronzing was measured to evaluate zinc sensitivity and used for QTL analysis. QTL was detected based on the phenotypic data from the wet season of 2004. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 27,602,683-32,061,040 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI IR74/Jalmagna RI AFLP/RFLP QTL 2001 | BNL6.32 | 1 | 66.1-75.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQHG001 | 1 | 66.1 | 75.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ154-3 | RFLP | Oryza sativa | qtl_marker |
To | RZ527 | RFLP | Oryza sativa | qtl_marker |
To | RG541 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000351) | Wissuwa-M et al., 2006 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007309) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wissuwa-M et al., 2006 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 27,602,683 | 32,061,040 | ~160K SNPs x 20 accessions (McNally 2... | 3,571 | Search for SNPs |
chr1 | 27,602,683 | 32,061,040 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
chr1 | 27,602,683 | 32,061,040 | Huang X, et al, Nat Genetics 2010 Nov... | 7,983 | Search for SNPs |
chr1 | 27,602,683 | 32,061,040 | RiceDiversity 44K SNP assay, 34 trait... | 7,983 | Search for SNPs |
chr1 | 27,602,683 | 32,061,040 | RiceDiversity 44K SNP assay, 34 trait... | 618 | Search for SNPs |