QTL Accession ID | AQHF016 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CHLCN |
Trait Name | chlorophyll content |
Published Symbol | QDg4a |
Trait Synonym(s) | |
Trait Category | Biochemical |
Chromosome | 4 |
Comments | The degree of greenness (DG) of the flag leaves from the biggest two tillers was measured on the day of heading to evaluate chlorophyll content and used for QTL analysis. The QTL was detected using the phenotype data of 2003. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 18,824,746-20,519,179 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 4 | 22.7-38.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQHF016 | 4 | 22.7 | 38.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM471 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM142 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM307 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM119 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000495) | Yue-B et al., 2006 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yue-B et al., 2006 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 18,824,746 | 20,519,179 | ~160K SNPs x 20 accessions (McNally 2... | 1,021 | Search for SNPs |
chr4 | 18,824,746 | 20,519,179 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
chr4 | 18,824,746 | 20,519,179 | Huang X, et al, Nat Genetics 2010 Nov... | 4,501 | Search for SNPs |
chr4 | 18,824,746 | 20,519,179 | RiceDiversity 44K SNP assay, 34 trait... | 4,501 | Search for SNPs |
chr4 | 18,824,746 | 20,519,179 | RiceDiversity 44K SNP assay, 34 trait... | 228 | Search for SNPs |