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Oryza sativa QTL "AQHF012" (leaf area)
| QTL Accession ID | AQHF012 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | LFAR | ||||
| Trait Name | leaf area | ||||
| Published Symbol | Qfla6 | ||||
| Trait Synonym(s) |
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| Trait Category | Anatomy | ||||
| Chromosome | 6 | ||||
| Comments | Flag leaf area (FLA, =FLL x FLW) derived from flag leaf length and leaf width was calculated to evaluate leaf area and used for QTL analysis. The QTL was detected using the phenotype data of 2003. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 5,096,744-6,230,185 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHAU Zhenshan 97/IRAT109 SSR QTL 2006 | BNL6.32 | 6 | 34.2-45.3 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQHF012 | 6 | 34.2 | 45.3 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM111 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM276 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM314 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM539 | SSR | Oryza sativa Japonica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000540) | Yue-B et al., 2006 (IAGP) |
| Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| (PO:0007134) | Gramene curators, 2007 (IC) | |
| Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
| (GRO:0007140) | Gramene curators, 2007 (IC) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Yue-B et al., 2006 (SM) |
Database Cross-References (1)
SNPs (7,830)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr6 | 5,096,744 | 6,230,185 | ~160K SNPs x 20 accessions (McNally 2... | 461 | Search for SNPs |
| chr6 | 5,096,744 | 6,230,185 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
| chr6 | 5,096,744 | 6,230,185 | Huang X, et al, Nat Genetics 2010 Nov... | 3,632 | Search for SNPs |
| chr6 | 5,096,744 | 6,230,185 | RiceDiversity 44K SNP assay, 34 trait... | 3,632 | Search for SNPs |
| chr6 | 5,096,744 | 6,230,185 | RiceDiversity 44K SNP assay, 34 trait... | 102 | Search for SNPs |
