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Oryza sativa QTL "AQGS058" (harvest index)
| QTL Accession ID | AQGS058 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | HVID | ||||||
| Trait Name | harvest index | ||||||
| Published Symbol | |||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||
| Chromosome | 1 | ||||||
| Comments | The QTL has been detected from an interspecific BC2 testcross progeny (IR58025/O. rufipogon (IC22015)//IR580325B///KMR3). This locus has the significant interaction with another locus, AQGS059. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 5,941,464-5,941,581 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | INDIR IR58025/O. rufipogon BC SSR QTL 2005 | BNL6.32 | 1 | 48.8-48.8 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQGS058 | 1 | 48.8 | 48.8 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM272 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM220 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM259 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000128) | Marri-P-R et al., 2005 (IAGP) |
| Plant Structure | (PO:0009006) | Gramene curators, 2007 (IC) |
| (PO:0009010) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Marri-P-R et al., 2005 (SM) |
Database Cross-References (1)
SNPs (2)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 5,941,464 | 5,941,581 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr1 | 5,941,464 | 5,941,581 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr1 | 5,941,464 | 5,941,581 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
| chr1 | 5,941,464 | 5,941,581 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
| chr1 | 5,941,464 | 5,941,581 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
