QTL Accession ID | AQGS002 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | PTHT | ||||
Trait Name | plant height | ||||
Published Symbol | ph1.2 | ||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||
Chromosome | 1 | ||||
Comments | The QTL has been detected from an interspecific BC2 testcross progeny (IR58025/O. rufipogon (IC22015)//IR580325B///KMR3). The allele from IC 22015 has positive phenotypic effect. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 5,941,464-7,445,919 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | INDIR IR58025/O. rufipogon BC SSR QTL 2005 | BNL6.32 | 1 | 48.8-66.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGS002 | 1 | 48.8 | 66.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM272 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM259 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM220 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM243 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000207) | Marri-P-R et al., 2005 (IAGP) |
Plant Structure | (PO:0009006) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Marri-P-R et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 5,941,464 | 7,445,919 | ~160K SNPs x 20 accessions (McNally 2... | 1,189 | Search for SNPs |
chr1 | 5,941,464 | 7,445,919 | '1536 chip' - 1311 SNPs x 395 rice ac... | 10 | Search for SNPs |
chr1 | 5,941,464 | 7,445,919 | Huang X, et al, Nat Genetics 2010 Nov... | 4,746 | Search for SNPs |
chr1 | 5,941,464 | 7,445,919 | RiceDiversity 44K SNP assay, 34 trait... | 4,746 | Search for SNPs |
chr1 | 5,941,464 | 7,445,919 | RiceDiversity 44K SNP assay, 34 trait... | 632 | Search for SNPs |