QTL Accession ID | AQGR002 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | SALTSN |
Trait Name | salt sensitivity |
Published Symbol | qST3 |
Trait Synonym(s) |
saline sensitivity salt tolerance |
Trait Category | Abiotic stress |
Chromosome | 3 |
Comments | The visual scores at the seedling stage have been measured to evaluate salt tolerance and used for QTL analysis. The Milyang23 allele increases the salt tolerance. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 22,798,284-22,830,744 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 3 | 116.9-120.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGR002 | 3 | 116.9 | 120.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG179 | RFLP | Oryza sativa | qtl_marker |
To | RG96 | RFLP | Oryza sativa | qtl_marker |
To | RZ598 | RFLP | Oryza sativa | qtl_marker |
To | RZ585 | RFLP | Oryza sativa | qtl_marker |
To | RM16 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ403 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000429) | Lee-S-Y et al., 2006 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007185) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lee-S-Y et al., 2006 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 22,798,284 | 22,830,744 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr3 | 22,798,284 | 22,830,744 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 22,798,284 | 22,830,744 | Huang X, et al, Nat Genetics 2010 Nov... | 86 | Search for SNPs |
chr3 | 22,798,284 | 22,830,744 | RiceDiversity 44K SNP assay, 34 trait... | 86 | Search for SNPs |
chr3 | 22,798,284 | 22,830,744 | RiceDiversity 44K SNP assay, 34 trait... | 0 |