Oryza sativa QTL "AQGP023" (spikelet fertility)

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Oryza sativa QTL "AQGP023" (spikelet fertility)

QTL Accession ID

AQGP023

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Trait Symbol

SPKFRT

Trait Name

spikelet fertility

Published Symbol

qFER-8

Trait Synonym(s)

FRP	SF
fertility percentage	percent sterility
seed setting

Trait Category

Sterility or fertility

Chromosome

Comments

The QTL has been detected from an interspecific BC2F2 population (Milyang 23/O. rufipogon//Milyang 23), and its position has been displayed on the IR64/Azucena DH SSR map. The allele from O. rufipogan has positive phenotypic effect.

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 8

24,791,861-25,592,993 bp

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Details

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Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

Cornell IR64/Azu DH QTL 2001

BNL6.32

112.2-112.2 cM

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Details

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QTL DB Map Position (1)

Name	Chromosome	Start	Stop
AQGP023	8	112.2	112.2

Associated Markers (3)

Direction	Name	Type	Species	Assoc. Type
To	RM230	SSR	Oryza sativa Indica Group	qtl_marker
To	RM308	SSR	Oryza sativa Indica Group	qtl_marker
To	RZ66	RFLP	Oryza sativa	qtl_marker

Associated Genes (0)

Associated Ontologies (6)

Term Type	Term	Evidence
Trait Ontology	(TO:0000180)	Cho-Y-C et al., 2003 (IAGP)
Plant Structure	(PO:0009051)	Gramene curators, 2007 (IC)
Plant Growth and Development Stage	(PO:0007130)	Gramene curators, 2007 (IC)
Growth Stage	(GRO:0007044)	Gramene curators, 2007 (IC)
Environment	(EO:0007403)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Cho-Y-C et al., 2003 (SM)

Database Cross-References (1)

Gramene Literature	Cho-Y-C, Suh-J-P, Choi-I-S, Hong-H-C, Baek-M-K, Kang-K-H, Kim-Y-G, Ahn-S-N, Choi-H-C, Hwang-H-G, Moon-H-P, "QTLs analysis of yield and its related traits in wild rice relative Oryza rufipogon", Treat. of Crop Res., 2003, vol. 4, pp. 19-29

SNPs (6,060)

Chr	Start	Stop	Exp	Num. SNP Positions
chr8	24,791,861	25,592,993	~160K SNPs x 20 accessions (McNally 2...	115	Search for SNPs
chr8	24,791,861	25,592,993	'1536 chip' - 1311 SNPs x 395 rice ac...	3	Search for SNPs
chr8	24,791,861	25,592,993	Huang X, et al, Nat Genetics 2010 Nov...	2,945	Search for SNPs
chr8	24,791,861	25,592,993	RiceDiversity 44K SNP assay, 34 trait...	2,945	Search for SNPs
chr8	24,791,861	25,592,993	RiceDiversity 44K SNP assay, 34 trait...	52	Search for SNPs