QTL Accession ID | AQGP006 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | CULMLG |
Trait Name | culm length |
Published Symbol | qCL-1 |
Trait Synonym(s) |
CL cml |
Trait Category | Anatomy |
Chromosome | 1 |
Comments | The QTL has been detected from an interspecific BC2F2 population (Milyang 23/O. rufipogon//Milyang 23), and its position has been displayed on the IR64/Azucena DH SSR map. The allele from O. rufipogan has negative phenotypic effect. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 34,032,918-34,940,769 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 1 | 154.8-154.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGP006 | 1 | 154.8 | 154.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM226 | SSR | Oryza sativa | qtl_marker |
To | RZ730 | RFLP | Oryza sativa | qtl_marker |
To | RM486 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM265 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000576) | Cho-Y-C et al., 2003 (IAGP) |
Plant Structure | (PO:0009047) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cho-Y-C et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 34,032,918 | 34,940,769 | ~160K SNPs x 20 accessions (McNally 2... | 707 | Search for SNPs |
chr1 | 34,032,918 | 34,940,769 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
chr1 | 34,032,918 | 34,940,769 | Huang X, et al, Nat Genetics 2010 Nov... | 1,245 | Search for SNPs |
chr1 | 34,032,918 | 34,940,769 | RiceDiversity 44K SNP assay, 34 trait... | 1,245 | Search for SNPs |
chr1 | 34,032,918 | 34,940,769 | RiceDiversity 44K SNP assay, 34 trait... | 145 | Search for SNPs |