QTL Accession ID | AQGM025 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TSDWT | ||||||||||
Trait Name | 1000-seed weight | ||||||||||
Published Symbol | qGW-2 | ||||||||||
Trait Synonym(s) |
|
||||||||||
Trait Category | Yield | ||||||||||
Chromosome | 2 | ||||||||||
Comments | The QTL has been detected from an interspecific BC3F2 population (Milyang 23/O. glaberrima (IRGC #103544)//3*Milyang 23), and its position has been displayed on the IR64/Azucena DH SSR map. The allele from O. glaberrima has positive phenotypic effect. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 32,774,365-32,774,553 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 2 | 170.1-170.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGM025 | 2 | 170.1 | 170.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM250 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM425 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RG95 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000382) | Suh-J-P et al., 2005 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Suh-J-P et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 32,774,365 | 32,774,553 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
chr2 | 32,774,365 | 32,774,553 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 32,774,365 | 32,774,553 | Huang X, et al, Nat Genetics 2010 Nov... | 0 | |
chr2 | 32,774,365 | 32,774,553 | RiceDiversity 44K SNP assay, 34 trait... | 0 | |
chr2 | 32,774,365 | 32,774,553 | RiceDiversity 44K SNP assay, 34 trait... | 0 |