QTL Accession ID | AQGM003 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | qDTH-6 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 6 | ||||
Comments | The QTL has been detected from an interspecific BC3F2 population (Milyang 23/O. glaberrima (IRGC #103544)//3*Milyang 23), and its position has been displayed on the IR64/Azucena DH SSR map. The allele from O. glaberrima has negative phenotypic effect. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 3,416,533-3,459,750 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 6 | 26.2-26.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGM003 | 6 | 26.2 | 26.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ398 | RFLP | Oryza sativa | qtl_marker |
To | RM225 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM584 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM204 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM58 | SSR | Oryza sativa | qtl_marker |
To | RM314 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Suh-J-P et al., 2005 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Suh-J-P et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 3,416,533 | 3,459,750 | ~160K SNPs x 20 accessions (McNally 2... | 67 | Search for SNPs |
chr6 | 3,416,533 | 3,459,750 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 3,416,533 | 3,459,750 | Huang X, et al, Nat Genetics 2010 Nov... | 142 | Search for SNPs |
chr6 | 3,416,533 | 3,459,750 | RiceDiversity 44K SNP assay, 34 trait... | 142 | Search for SNPs |
chr6 | 3,416,533 | 3,459,750 | RiceDiversity 44K SNP assay, 34 trait... | 11 | Search for SNPs |