QTL Accession ID | AQGL006 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | SHBTRS | ||||
Trait Name | sheath blight disease resistance | ||||
Published Symbol | QSbr12a | ||||
Trait Synonym(s) |
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Trait Category | Biotic stress | ||||
Chromosome | 12 | ||||
Comments | The QTL has been detected based on the phenotypic data obtained in 1990. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 1,548,040-5,758,850 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | TAMU Lem/Teq RI QTL 1995 | BNL6.32 | 12 | 129-139 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGL006 | 12 | 129 | 139 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG241 | RFLP | Oryza sativa | qtl_marker |
To | RZ397 | RFLP | Oryza sativa | qtl_marker |
To | RG445 | RFLP | Oryza sativa | qtl_marker |
To | RZ257 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000255) | Li-Z-K et al., 1995 (IAGP) |
Plant Structure | (PO:0020104) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007072) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-Z-K et al., 1995 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 1,548,040 | 5,758,850 | ~160K SNPs x 20 accessions (McNally 2... | 1,757 | Search for SNPs |
chr12 | 1,548,040 | 5,758,850 | '1536 chip' - 1311 SNPs x 395 rice ac... | 14 | Search for SNPs |
chr12 | 1,548,040 | 5,758,850 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 1,548,040 | 5,758,850 | Huang X, et al, Nat Genetics 2010 Nov... | 6,101 | Search for SNPs |
chr12 | 1,548,040 | 5,758,850 | RiceDiversity 44K SNP assay, 34 trait... | 6,101 | Search for SNPs |
chr12 | 1,548,040 | 5,758,850 | RiceDiversity 44K SNP assay, 34 trait... | 355 | Search for SNPs |