QTL Accession ID | AQGJ028 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | LFNICN |
Trait Name | leaf nitrogen content |
Published Symbol | |
Trait Synonym(s) | total leaf content |
Trait Category | Biochemical |
Chromosome | 10 |
Comments | The QTL has been detected under the high nitrogen condition. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 10 | 21,098,188-21,099,881 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Aberdeen Bala/Azu QTL 2002 | BNL6.32 | 10 | 107.4-107.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGJ028 | 10 | 107.4 | 107.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C16 | RFLP | Oryza sativa | qtl_marker |
To | G1082 | RFLP | Oryza sativa | qtl_marker |
To | C223 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000543) | Talukder-Z-I et al., 2005 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Talukder-Z-I et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr10 | 21,098,188 | 21,099,881 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr10 | 21,098,188 | 21,099,881 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr10 | 21,098,188 | 21,099,881 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr10 | 21,098,188 | 21,099,881 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr10 | 21,098,188 | 21,099,881 | RiceDiversity 44K SNP assay, 34 trait... | 0 |