QTL Accession ID | AQGI230 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | TBIOMYLD |
Trait Name | total biomass yield |
Published Symbol | |
Trait Synonym(s) |
dry matter yield total dry weight |
Trait Category | Yield |
Chromosome | 7 |
Comments | Plant weight under normal N conditions has been measured to evaluate plant weight and used for QTL analysis. This locus was found to have significant interaction with another locus, AQGI243. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 2,316,691-7,232,998 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 7 | 4.3-51.5 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGI230 | 7 | 4.3 | 51.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG128 | RFLP | Oryza sativa | qtl_marker |
To | e11k3 | RFLP | Oryza sativa | qtl_marker |
To | C1023 | RFLP | Oryza sativa | qtl_marker |
To | RG528 | RFLP | Oryza sativa | qtl_marker |
To | R1440 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000457) | Lian-X et al., 2005 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lian-X et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr7 | 2,316,691 | 7,232,998 | ~160K SNPs x 20 accessions (McNally 2... | 813 | Search for SNPs |
chr7 | 2,316,691 | 7,232,998 | '1536 chip' - 1311 SNPs x 395 rice ac... | 8 | Search for SNPs |
chr7 | 2,316,691 | 7,232,998 | Huang X, et al, Nat Genetics 2010 Nov... | 10,839 | Search for SNPs |
chr7 | 2,316,691 | 7,232,998 | RiceDiversity 44K SNP assay, 34 trait... | 10,839 | Search for SNPs |
chr7 | 2,316,691 | 7,232,998 | RiceDiversity 44K SNP assay, 34 trait... | 261 | Search for SNPs |