QTL Accession ID | AQGI166 | ||||||||
---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
Trait Symbol | BIOMYLD | ||||||||
Trait Name | biomass yield | ||||||||
Published Symbol | rsw3b | ||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||
Chromosome | 3 | ||||||||
Comments | Relative shoot weight in two N treatments has been measured to evaluate shoot weight and used for QTL analysis. This locus was found to have significant interaction with another locus, AQGI180. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 28,724,004-34,925,301 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 3 | 131-172.8 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQGI166 | 3 | 131 | 172.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM55 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM200 | SSR | Oryza sativa Indica Group | qtl_marker |
To | R321 | RFLP | Oryza sativa | qtl_marker |
To | RM227 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000327) | Lian-X et al., 2005 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lian-X et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 28,724,004 | 34,925,301 | ~160K SNPs x 20 accessions (McNally 2... | 3,767 | Search for SNPs |
chr3 | 28,724,004 | 34,925,301 | '1536 chip' - 1311 SNPs x 395 rice ac... | 18 | Search for SNPs |
chr3 | 28,724,004 | 34,925,301 | Huang X, et al, Nat Genetics 2010 Nov... | 13,538 | Search for SNPs |
chr3 | 28,724,004 | 34,925,301 | RiceDiversity 44K SNP assay, 34 trait... | 13,538 | Search for SNPs |
chr3 | 28,724,004 | 34,925,301 | RiceDiversity 44K SNP assay, 34 trait... | 653 | Search for SNPs |