QTL Accession ID | AQGI143 | ||||||||
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Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
Trait Symbol | BIOMYLD | ||||||||
Trait Name | biomass yield | ||||||||
Published Symbol | |||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||
Chromosome | 5 | ||||||||
Comments | Shoot weight under normal N conditions has been measured to evaluate shoot weight and used for QTL analysis. This locus was found to have significant interaction with another locus, AQGI151. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 5 | 26,934,304-27,342,124 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 5 | 114.4-116.9 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQGI143 | 5 | 114.4 | 116.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C246 | RFLP | Oryza sativa | qtl_marker |
To | RM26 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM274 | SSR | Oryza sativa Indica Group | qtl_marker |
To | C1447 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000327) | Lian-X et al., 2005 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lian-X et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr5 | 26,934,304 | 27,342,124 | ~160K SNPs x 20 accessions (McNally 2... | 287 | Search for SNPs |
chr5 | 26,934,304 | 27,342,124 | '1536 chip' - 1311 SNPs x 395 rice ac... | 2 | Search for SNPs |
chr5 | 26,934,304 | 27,342,124 | Huang X, et al, Nat Genetics 2010 Nov... | 312 | Search for SNPs |
chr5 | 26,934,304 | 27,342,124 | RiceDiversity 44K SNP assay, 34 trait... | 312 | Search for SNPs |
chr5 | 26,934,304 | 27,342,124 | RiceDiversity 44K SNP assay, 34 trait... | 53 | Search for SNPs |