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Oryza sativa QTL "AQGI132" (biomass yield)
| QTL Accession ID | AQGI132 | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
| Trait Symbol | BIOMYLD | ||||||||
| Trait Name | biomass yield | ||||||||
| Published Symbol | n+s1a | ||||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||||
| Chromosome | 1 | ||||||||
| Comments | Shoot weight under normal N conditions has been measured to evaluate shoot weight and used for QTL analysis. This locus has main effects on the phenotype. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 198,822-1,891,260 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 1 | 0-10.7 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQGI132 | 1 | 0 | 10.7 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C161 | RFLP | Oryza sativa | qtl_marker |
| To | R753 | RFLP | Oryza sativa | qtl_marker |
| To | G359 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000327) | Lian-X et al., 2005 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Lian-X et al., 2005 (SM) |
Database Cross-References (1)
SNPs (10,399)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 198,822 | 1,891,260 | ~160K SNPs x 20 accessions (McNally 2... | 1,412 | Search for SNPs |
| chr1 | 198,822 | 1,891,260 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
| chr1 | 198,822 | 1,891,260 | Huang X, et al, Nat Genetics 2010 Nov... | 4,361 | Search for SNPs |
| chr1 | 198,822 | 1,891,260 | RiceDiversity 44K SNP assay, 34 trait... | 4,361 | Search for SNPs |
| chr1 | 198,822 | 1,891,260 | RiceDiversity 44K SNP assay, 34 trait... | 258 | Search for SNPs |
