QTL Accession ID | AQGI124 | ||||||||
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Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
Trait Symbol | BIOMYLD | ||||||||
Trait Name | biomass yield | ||||||||
Published Symbol | |||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||
Chromosome | 6 | ||||||||
Comments | Shoot weight under low N stress conditions has been measured to evaluate shoot weight and used for QTL analysis. This locus was found to have significant interaction with another locus, AQGI113. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 1,355,154-1,372,325 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 6 | 6.2-8.4 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQGI124 | 6 | 6.2 | 8.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R3139 | RFLP | Oryza sativa | qtl_marker |
To | C952 | RFLP | Oryza sativa | qtl_marker |
To | C474 | RFLP | Oryza sativa | qtl_marker |
To | C1496 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000327) | Lian-X et al., 2005 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lian-X et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 1,355,154 | 1,372,325 | ~160K SNPs x 20 accessions (McNally 2... | 23 | Search for SNPs |
chr6 | 1,355,154 | 1,372,325 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 1,355,154 | 1,372,325 | Huang X, et al, Nat Genetics 2010 Nov... | 54 | Search for SNPs |
chr6 | 1,355,154 | 1,372,325 | RiceDiversity 44K SNP assay, 34 trait... | 54 | Search for SNPs |
chr6 | 1,355,154 | 1,372,325 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |