QTL Accession ID | AQGI113 | ||||||||
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Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
Trait Symbol | BIOMYLD | ||||||||
Trait Name | biomass yield | ||||||||
Published Symbol | |||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||
Chromosome | 4 | ||||||||
Comments | Shoot weight under low N stress conditions has been measured to evaluate shoot weight and used for QTL analysis. This locus was found to have significant interaction with another locus, AQGI124. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 33,131,418-34,695,016 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 4 | 132.9-151.5 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQGI113 | 4 | 132.9 | 151.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C1016 | RFLP | Oryza sativa | qtl_marker |
To | C107 | RFLP | Oryza sativa | qtl_marker |
To | R78 | RFLP | Oryza sativa | qtl_marker |
To | RG620 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000327) | Lian-X et al., 2005 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lian-X et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 33,131,418 | 34,695,016 | ~160K SNPs x 20 accessions (McNally 2... | 560 | Search for SNPs |
chr4 | 33,131,418 | 34,695,016 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr4 | 33,131,418 | 34,695,016 | Huang X, et al, Nat Genetics 2010 Nov... | 2,077 | Search for SNPs |
chr4 | 33,131,418 | 34,695,016 | RiceDiversity 44K SNP assay, 34 trait... | 2,077 | Search for SNPs |
chr4 | 33,131,418 | 34,695,016 | RiceDiversity 44K SNP assay, 34 trait... | 107 | Search for SNPs |