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Oryza sativa QTL "AQGI112" (biomass yield)
| QTL Accession ID | AQGI112 | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
| Trait Symbol | BIOMYLD | ||||||||
| Trait Name | biomass yield | ||||||||
| Published Symbol | |||||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||||
| Chromosome | 4 | ||||||||
| Comments | Shoot weight under low N stress conditions has been measured to evaluate shoot weight and used for QTL analysis. This locus was found to have significant interaction with another locus, AQGI123. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 1,116,160-6,898,718 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 4 | 0-10.3 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQGI112 | 4 | 0 | 10.3 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C56 | RFLP | Oryza sativa | qtl_marker |
| To | C820 | RFLP | Oryza sativa | qtl_marker |
| To | C933 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000327) | Lian-X et al., 2005 (IAGP) |
| Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Lian-X et al., 2005 (SM) |
Database Cross-References (1)
SNPs (26,814)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 1,116,160 | 6,898,718 | ~160K SNPs x 20 accessions (McNally 2... | 1,923 | Search for SNPs |
| chr4 | 1,116,160 | 6,898,718 | '1536 chip' - 1311 SNPs x 395 rice ac... | 20 | Search for SNPs |
| chr4 | 1,116,160 | 6,898,718 | Huang X, et al, Nat Genetics 2010 Nov... | 12,201 | Search for SNPs |
| chr4 | 1,116,160 | 6,898,718 | RiceDiversity 44K SNP assay, 34 trait... | 12,201 | Search for SNPs |
| chr4 | 1,116,160 | 6,898,718 | RiceDiversity 44K SNP assay, 34 trait... | 469 | Search for SNPs |
