Oryza sativa QTL "AQGI048" (root dry weight)

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Oryza sativa QTL "AQGI048" (root dry weight)

QTL Accession ID

AQGI048

Species

Oryza sativa (Rice) [ GR_tax:013681 ]

Trait Symbol

RTDWT

Trait Name

root dry weight

Published Symbol

Trait Synonym(s)

TRDW	deep root dry weight per plant
deep root dry weight per tiller	deep root mass
rdw/t	root dry weight per tiller
total root dry weight

Trait Category

Vigor

Chromosome

Comments

Root weight under normal N conditions has been measured to evaluate root weight and used for QTL analysis. This locus was found to have significant interaction with another locus, AQGI064.

Map Positions (2)

Oryza sativa Japonica Group (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 6

1,355,154-1,358,034 bp

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Details

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Oryza sativa (1)

Map Type

Map Set

Name

Map

Position

Ext. Links

QTL

CNHZAU Zh97/Ming63 RI QTL 2002

BNL6.32

8.4-12.9 cM

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QTL DB Map Position (1)

Name	Chromosome	Start	Stop
AQGI048	6	8.4	12.9

Associated Markers (3)

Direction	Name	Type	Species	Assoc. Type
To	C952	RFLP	Oryza sativa	qtl_marker
To	R3139	RFLP	Oryza sativa	qtl_marker
To	C1496	RFLP	Oryza sativa	qtl_marker

Associated Genes (0)

Associated Ontologies (8)

Term Type	Term	Evidence
Trait Ontology	(TO:0000078)	Lian-X et al., 2005 (IAGP)
Plant Structure	(PO:0009005)	Gramene curators, 2007 (IC)
Plant Growth and Development Stage	(PO:0007130)	Gramene curators, 2007 (IC)
	(PO:0007134)	Gramene curators, 2007 (IC)
Growth Stage	(GRO:0007139)	Gramene curators, 2007 (IC)
	(GRO:0007140)	Gramene curators, 2007 (IC)
Environment	(EO:0007403)	Gramene curators, 2007 (IC)
Species Ontology	(GR_tax:013681)	Lian-X et al., 2005 (SM)

Database Cross-References (1)

Gramene Literature	Lian-X, Xing-Y, Yan-H, Xu-C, Li-X, Zhang-Q, "QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid", Theor Appl Genet, 2005, vol. 112, pp. 85-96

SNPs (18)

Chr	Start	Stop	Exp	Num. SNP Positions
chr6	1,355,154	1,358,034	~160K SNPs x 20 accessions (McNally 2...	0
chr6	1,355,154	1,358,034	'1536 chip' - 1311 SNPs x 395 rice ac...	0
chr6	1,355,154	1,358,034	Huang X, et al, Nat Genetics 2010 Nov...	9	Search for SNPs
chr6	1,355,154	1,358,034	RiceDiversity 44K SNP assay, 34 trait...	9	Search for SNPs
chr6	1,355,154	1,358,034	RiceDiversity 44K SNP assay, 34 trait...	0