QTL Accession ID | AQGI022 | ||||||||
---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||
Trait Symbol | RTDWT | ||||||||
Trait Name | root dry weight | ||||||||
Published Symbol | n-r11a | ||||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||||
Chromosome | 11 | ||||||||
Comments | Root weight under low N stress conditions has been measured to evaluate root weight and used for QTL analysis. This locus was found to have significant interaction with another locus, AQGI013. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 11 | 26,553,912-26,968,065 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 11 | 17-21.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGI022 | 11 | 17 | 21.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | L1044 | RFLP | Oryza sativa | qtl_marker |
To | C405 | RFLP | Oryza sativa | qtl_marker |
To | G181 | RFLP | Oryza sativa | qtl_marker |
To | Y6854L | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000078) | Lian-X et al., 2005 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Lian-X et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr11 | 26,553,912 | 26,968,065 | ~160K SNPs x 20 accessions (McNally 2... | 265 | Search for SNPs |
chr11 | 26,553,912 | 26,968,065 | '1536 chip' - 1311 SNPs x 395 rice ac... | 3 | Search for SNPs |
chr11 | 26,553,912 | 26,968,065 | Huang X, et al, Nat Genetics 2010 Nov... | 1,562 | Search for SNPs |
chr11 | 26,553,912 | 26,968,065 | RiceDiversity 44K SNP assay, 34 trait... | 1,562 | Search for SNPs |
chr11 | 26,553,912 | 26,968,065 | RiceDiversity 44K SNP assay, 34 trait... | 19 | Search for SNPs |