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Oryza sativa QTL "AQGH021" (seed number)
| QTL Accession ID | AQGH021 | ||||||
|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
| Trait Symbol | SDNB | ||||||
| Trait Name | seed number | ||||||
| Published Symbol | qGPL8 | ||||||
| Trait Synonym(s) |
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| Trait Category | Yield | ||||||
| Chromosome | 8 | ||||||
| Comments | The QTL have been detected from the introgression lines carrying variant introgressed segments from Chinese common wild rice (Oryza rufipogon Griff.) in the background of Indica cultivar, Guichao 2. The QTL have been display on the IR64/Azucena DH SSR map. Grains per plant has been measured to evaluate seed number and used for QTL analysis. The allele from O. rufipogon has negative phenotypic effect. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 15,438,081-15,438,317 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 8 | 69-69 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQGH021 | 8 | 69 | 69 |
Associated Markers (10)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM483 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM404 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RZ617 | RFLP | Oryza sativa | qtl_marker |
| To | RM44 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM72 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM137 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM331 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM325 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM330 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RG978 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000445) | Tian-F et al., 2005 (IAGP) |
| Plant Structure | (PO:0009010) | Tian-F et al., 2005 (SM) |
| Plant Growth and Development Stage | (PO:0007038 ) | Tian-F et al., 2005 (SM) |
| Growth Stage | (GRO:0007045) | Tian-F et al., 2005 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Tian-F et al., 2005 (SM) |
Database Cross-References (1)
SNPs (0)
