QTL Accession ID | AQGH015 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | SDWT | ||||||
Trait Name | seed weight | ||||||
Published Symbol | qGW9 | ||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||
Chromosome | 9 | ||||||
Comments | The QTL have been detected from the introgression lines carrying variant introgressed segments from Chinese common wild rice (Oryza rufipogon Griff.) in the background of Indica cultivar, Guichao 2. The QTL have been display on the IR64/Azucena DH SSR map. 1000-grain weight has been measured to evaluate seed weight and used for QTL analysis. The allele from O. rufipogon has negative phenotypic effect. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 10,799,952-12,924,416 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 9 | 14.3-14.3 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQGH015 | 9 | 14.3 | 14.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM342 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM524 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | G103 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000181) | Tian-F et al., 2005 (IAGP) |
Plant Structure | (PO:0009010) | Tian-F et al., 2005 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Tian-F et al., 2005 (SM) |
Growth Stage | (GRO:0007045) | Tian-F et al., 2005 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tian-F et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr9 | 10,799,952 | 12,924,416 | ~160K SNPs x 20 accessions (McNally 2... | 583 | Search for SNPs |
chr9 | 10,799,952 | 12,924,416 | '1536 chip' - 1311 SNPs x 395 rice ac... | 11 | Search for SNPs |
chr9 | 10,799,952 | 12,924,416 | Huang X, et al, Nat Genetics 2010 Nov... | 6,082 | Search for SNPs |
chr9 | 10,799,952 | 12,924,416 | RiceDiversity 44K SNP assay, 34 trait... | 6,082 | Search for SNPs |
chr9 | 10,799,952 | 12,924,416 | RiceDiversity 44K SNP assay, 34 trait... | 182 | Search for SNPs |