QTL Accession ID | AQGH010 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | SDSPCENT | ||||
Trait Name | seed set percent | ||||
Published Symbol | qSS7 | ||||
Trait Synonym(s) |
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Trait Category | Yield | ||||
Chromosome | 7 | ||||
Comments | The QTL have been detected from the introgression lines carrying variant introgressed segments from Chinese common wild rice (Oryza rufipogon Griff.) in the background of Indica cultivar, Guichao 2. The QTL have been display on the IR64/Azucena DH SSR map. Seed set rate has been measured to evaluate seed set percent and used for QTL analysis. The allele from O. rufipogon has negative phenotypic effect. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 19,256,914-19,257,039 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 7 | 47-47 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQGH010 | 7 | 47 | 47 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM11 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM432 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM560 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000455) | Tian-F et al., 2005 (IAGP) |
Plant Structure | (PO:0009010) | Tian-F et al., 2005 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Tian-F et al., 2005 (SM) |
Growth Stage | (GRO:0007045) | Tian-F et al., 2005 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tian-F et al., 2005 (SM) |