QTL Accession ID | AQGH006 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | SDNB | ||||||
Trait Name | seed number | ||||||
Published Symbol | qGPA8 | ||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||
Chromosome | 8 | ||||||
Comments | The QTL have been detected from the introgression lines carrying variant introgressed segments from Chinese common wild rice (Oryza rufipogon Griff.) in the background of Indica cultivar, Guichao 2. The QTL have been display on the IR64/Azucena DH SSR map. Grains per panicle has been measured to evaluate seed number and used for QTL analysis. The allele from O. rufipogon has positive phenotypic effect. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 20,094,533-20,094,695 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 8 | 78.4-78.4 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQGH006 | 8 | 78.4 | 78.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM42 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM342 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM339 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM223 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM515 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000445) | Tian-F et al., 2005 (IAGP) |
Plant Structure | (PO:0009010) | Tian-F et al., 2005 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Tian-F et al., 2005 (SM) |
Growth Stage | (GRO:0007045) | Tian-F et al., 2005 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Tian-F et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 20,094,533 | 20,094,695 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr8 | 20,094,533 | 20,094,695 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr8 | 20,094,533 | 20,094,695 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
chr8 | 20,094,533 | 20,094,695 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
chr8 | 20,094,533 | 20,094,695 | RiceDiversity 44K SNP assay, 34 trait... | 0 |