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Oryza sativa QTL "AQGG007" (callus induction)
| QTL Accession ID | AQGG007 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | CAIND |
| Trait Name | callus induction |
| Published Symbol | qSc1-2 |
| Trait Synonym(s) |
CI callus induction frequency |
| Trait Category | Vigor |
| Chromosome | 1 |
| Comments | Subcultured callus color was measured to evaluate callus induction and used for QTL analysis. The Kasalath allele improved callus color through induction and subculture. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 26,872,660-26,873,702 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | NIAS Kosh/Kas BIL QTL 2003 | BNL6.32 | 1 | 83.9-83.9 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQGG007 | 1 | 83.9 | 83.9 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | C122 | RFLP | Oryza sativa | qtl_marker |
| To | R2816 | RFLP | Oryza sativa | qtl_marker |
| To | C1370 | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (5)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000428) | Taguchi-Shiobara-F et al., 2006 (IAGP) |
| Plant Growth and Development Stage | (PO:0009012) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007175) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Taguchi-Shiobara-F et al., 2006 (SM) |
Database Cross-References (1)
SNPs (6)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 26,872,660 | 26,873,702 | ~160K SNPs x 20 accessions (McNally 2... | 1 | Search for SNPs |
| chr1 | 26,872,660 | 26,873,702 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr1 | 26,872,660 | 26,873,702 | Huang X, et al, Nat Genetics 2010 Nov... | 2 | Search for SNPs |
| chr1 | 26,872,660 | 26,873,702 | RiceDiversity 44K SNP assay, 34 trait... | 2 | Search for SNPs |
| chr1 | 26,872,660 | 26,873,702 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
