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Oryza sativa QTL "AQGG005" (callus induction)
| QTL Accession ID | AQGG005 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | CAIND |
| Trait Name | callus induction |
| Published Symbol | qSv1 |
| Trait Synonym(s) |
CI callus induction frequency |
| Trait Category | Vigor |
| Chromosome | 1 |
| Comments | Subcultured callus volume was measured to evaluate callus induction and used for QTL analysis. The Kasalath alleles improved callus color through callus induction and subculture, and increased the subcultured-callus volume and the fresh weight of regenerated calli, including shoots, roots, and differentiated structures. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 10,491,017-15,618,206 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | NIAS Kosh/Kas BIL QTL 2003 | BNL6.32 | 1 | 40-47.1 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQGG005 | 1 | 40 | 47.1 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | R210 | RFLP | Oryza sativa | qtl_marker |
| To | C1905 | RFLP | Oryza sativa | qtl_marker |
| To | C178 | RFLP | Oryza sativa | qtl_marker |
| To | S11214 | RFLP | Oryza sativa | qtl_marker |
| To | R10920S | RFLP | Oryza sativa | qtl_marker |
Associated Genes (0)
Associated Ontologies (5)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000428) | Taguchi-Shiobara-F et al., 2006 (IAGP) |
| Plant Growth and Development Stage | (PO:0009012) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007175) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Taguchi-Shiobara-F et al., 2006 (SM) |
Database Cross-References (1)
SNPs (28,264)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 10,491,017 | 15,618,206 | ~160K SNPs x 20 accessions (McNally 2... | 2,434 | Search for SNPs |
| chr1 | 10,491,017 | 15,618,206 | '1536 chip' - 1311 SNPs x 395 rice ac... | 17 | Search for SNPs |
| chr1 | 10,491,017 | 15,618,206 | Huang X, et al, Nat Genetics 2010 Nov... | 12,668 | Search for SNPs |
| chr1 | 10,491,017 | 15,618,206 | RiceDiversity 44K SNP assay, 34 trait... | 12,668 | Search for SNPs |
| chr1 | 10,491,017 | 15,618,206 | RiceDiversity 44K SNP assay, 34 trait... | 477 | Search for SNPs |
