QTL Accession ID | AQGE005 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | CKKEL | ||||
Trait Name | cooked kernel elongation | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Quality | ||||
Chromosome | 2 | ||||
Comments | Length elongation of cooked rice was measured to evaluate cooked kernel elongation and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 535,004-537,014 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 2a | 7.7-19.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGE005 | 2 | 7.7 | 19.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | R2510 | RFLP | Oryza sativa | qtl_marker |
To | RM211 | SSR | Oryza sativa Indica Group | qtl_marker |
To | PSR167 | RFLP | Triticum aestivum | qtl_marker |
To | RG634 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000377) | Ge-X-J et al., 2005 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ge-X-J et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 535,004 | 537,014 | ~160K SNPs x 20 accessions (McNally 2... | 4 | Search for SNPs |
chr2 | 535,004 | 537,014 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr2 | 535,004 | 537,014 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
chr2 | 535,004 | 537,014 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
chr2 | 535,004 | 537,014 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |