QTL Accession ID | AQGD023 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | HULCL |
Trait Name | hull color |
Published Symbol | qHCB 4 |
Trait Synonym(s) | pigment on hull |
Trait Category | Quality |
Chromosome | 4 |
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 18,824,746-35,151,763 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 4 | 16.8-160.7 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGD023 | 4 | 16.8 | 160.7 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM167 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM471 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM564 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM241 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM252 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM209 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM317 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM349 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM559 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM518 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000706) | Gu-X-Y et al., 2005 (IAGP) |
Plant Structure | (PO:0009001) | Gu-X-Y et al., 2005 (SM) |
(PO:0006000) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007038 ) | Gu-X-Y et al., 2005 (SM) |
Growth Stage | (GRO:0007045) | Gu-X-Y et al., 2005 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Gu-X-Y et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 18,824,746 | 35,151,763 | ~160K SNPs x 20 accessions (McNally 2... | 6,843 | Search for SNPs |
chr4 | 18,824,746 | 35,151,763 | '1536 chip' - 1311 SNPs x 395 rice ac... | 56 | Search for SNPs |
chr4 | 18,824,746 | 35,151,763 | Huang X, et al, Nat Genetics 2010 Nov... | 34,734 | Search for SNPs |
chr4 | 18,824,746 | 35,151,763 | RiceDiversity 44K SNP assay, 34 trait... | 34,734 | Search for SNPs |
chr4 | 18,824,746 | 35,151,763 | RiceDiversity 44K SNP assay, 34 trait... | 1,561 | Search for SNPs |