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Oryza sativa QTL "AQGD018" (grain shattering)
| QTL Accession ID | AQGD018 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | GRSH |
| Trait Name | grain shattering |
| Published Symbol | qSH7 |
| Trait Synonym(s) | seed shattering |
| Trait Category | Anatomy |
| Chromosome | 7 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 25,652,511-29,561,451 bp | View Comparative Map | |||
|
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | NDSU EM93/SS18 BC QTL 2004 | BNL6.32 | 7 | 120.5-146.4 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQGD018 | 7 | 120.5 | 146.4 |
Associated Markers (5)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RM18 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM118 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM172 | SSR | Oryza sativa Japonica Group | qtl_marker |
| To | RM234 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM248 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (7)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000473) | Gu-X-Y et al., 2005 (IAGP) |
| Plant Structure | (PO:0009001) | Gu-X-Y et al., 2005 (SM) |
| (PO:0009010) | Gramene curators, 2007 (IC) | |
| Plant Growth and Development Stage | (PO:0007038 ) | Gu-X-Y et al., 2005 (SM) |
| Growth Stage | (GRO:0007045) | Gu-X-Y et al., 2005 (SM) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Gu-X-Y et al., 2005 (SM) |
Database Cross-References (1)
SNPs (20,417)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr7 | 25,652,511 | 29,561,451 | ~160K SNPs x 20 accessions (McNally 2... | 1,319 | Search for SNPs |
| chr7 | 25,652,511 | 29,561,451 | '1536 chip' - 1311 SNPs x 395 rice ac... | 23 | Search for SNPs |
| chr7 | 25,652,511 | 29,561,451 | Huang X, et al, Nat Genetics 2010 Nov... | 9,353 | Search for SNPs |
| chr7 | 25,652,511 | 29,561,451 | RiceDiversity 44K SNP assay, 34 trait... | 9,353 | Search for SNPs |
| chr7 | 25,652,511 | 29,561,451 | RiceDiversity 44K SNP assay, 34 trait... | 369 | Search for SNPs |
