QTL Accession ID | AQGC035 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | PENRTLG |
Trait Name | penetrated root length |
Published Symbol | |
Trait Synonym(s) |
PRL prl |
Trait Category | Abiotic stress |
Chromosome | 1 |
Comments | Root penetration ability, and other root traits were evaluated in a greenhouse at Texas Tech University during the summer (May - July) and the fall (September - December), 1997. The plants were sampled for penetrated root length (PRL) at 50 days after sowing for the summer experiment. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 33,956,950-39,949,079 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | TTU IR58821/IR52561 QTL 2002 | BNL6.32 | 1 | 94.1-104.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGC035 | 1 | 94.1 | 104.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C813 | RFLP | Oryza sativa | qtl_marker |
To | WG110 | RFLP | Triticum aestivum | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000508) | Ali-M-L et al., 2000 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ali-M-L et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 33,956,950 | 39,949,079 | ~160K SNPs x 20 accessions (McNally 2... | 4,297 | Search for SNPs |
chr1 | 33,956,950 | 39,949,079 | '1536 chip' - 1311 SNPs x 395 rice ac... | 20 | Search for SNPs |
chr1 | 33,956,950 | 39,949,079 | Huang X, et al, Nat Genetics 2010 Nov... | 8,267 | Search for SNPs |
chr1 | 33,956,950 | 39,949,079 | RiceDiversity 44K SNP assay, 34 trait... | 8,267 | Search for SNPs |
chr1 | 33,956,950 | 39,949,079 | RiceDiversity 44K SNP assay, 34 trait... | 814 | Search for SNPs |