QTL Accession ID | AQGC011 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | PENRTNB | ||||
Trait Name | penetrated root number | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||
Chromosome | 3 | ||||
Comments | Root penetration ability, and other root traits were evaluated in a greenhouse at Texas Tech University during the summer (May - July) and the fall (September - December), 1997. The plants were sampled at 65 days after sowing for the fall experiment. The number of roots penetrated through a wax-petrolatum layer was evaluated and the trait was named as penetrated root number (PRN). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 27,127,661-28,813,128 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | TTU IR58821/IR52561 QTL 2002 | BNL6.32 | 3 | 100.5-113.9 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQGC011 | 3 | 100.5 | 113.9 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C746 | RFLP | Oryza sativa | qtl_marker |
To | RZ448 | RFLP | Oryza sativa | qtl_marker |
To | RG191 | RFLP | Oryza sativa | qtl_marker |
To | CDO122 | RFLP | Avena sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000083) | Ali-M-L et al., 2000 (IAGP) |
Plant Structure | (PO:0009005) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Ali-M-L et al., 2000 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 27,127,661 | 28,813,128 | ~160K SNPs x 20 accessions (McNally 2... | 2,065 | Search for SNPs |
chr3 | 27,127,661 | 28,813,128 | '1536 chip' - 1311 SNPs x 395 rice ac... | 10 | Search for SNPs |
chr3 | 27,127,661 | 28,813,128 | Huang X, et al, Nat Genetics 2010 Nov... | 5,373 | Search for SNPs |
chr3 | 27,127,661 | 28,813,128 | RiceDiversity 44K SNP assay, 34 trait... | 5,373 | Search for SNPs |
chr3 | 27,127,661 | 28,813,128 | RiceDiversity 44K SNP assay, 34 trait... | 773 | Search for SNPs |