QTL Accession ID | AQGB058 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | ENDFLR |
Trait Name | chalkiness of endosperm |
Published Symbol | qPGWC-8 |
Trait Synonym(s) |
chalky endosperm floury endosperm |
Trait Category | Quality |
Chromosome | 8 |
Comments | This QTL was detected under E3 test environment (Experimental Farm of Donghai County, Lianyungang, Jiangsu, China, N 35.1 Deg, E 118.4 Deg, June-November, 2001). Percentage of grains with chalkiness (PGWC, the ratio of the number of chalky grains to the total number of observed grains) was measured to evaluate chalkiness of endosperm and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 18,994,607-26,355,674 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | JKU Aso/IR24 QTL 1996 | BNL6.32 | 8 | 6.5-30.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQGB058 | 8 | 6.5 | 30.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G1149 | RFLP | Oryza sativa | qtl_marker |
To | G56 | RFLP | Oryza sativa | qtl_marker |
To | R2382 | RFLP | Oryza sativa | qtl_marker |
To | G187 | RFLP | Oryza sativa | qtl_marker |
To | XNpb126 | RFLP | Oryza sativa | qtl_marker |
To | C621 | RFLP | Oryza sativa | qtl_marker |
To | R727 | RFLP | Oryza sativa | qtl_marker |
To | R1394 | RFLP | Oryza sativa | qtl_marker |
To | R2027 | RFLP | Oryza sativa | qtl_marker |
To | C1115 | RFLP | Oryza sativa | qtl_marker |
To | R2381 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000104) | Wan-X-Y et al., 2005 (IAGP) |
Plant Structure | (PO:0009089) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007633) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Wan-X-Y et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 18,994,607 | 26,355,674 | ~160K SNPs x 20 accessions (McNally 2... | 2,170 | Search for SNPs |
chr8 | 18,994,607 | 26,355,674 | '1536 chip' - 1311 SNPs x 395 rice ac... | 22 | Search for SNPs |
chr8 | 18,994,607 | 26,355,674 | Huang X, et al, Nat Genetics 2010 Nov... | 13,390 | Search for SNPs |
chr8 | 18,994,607 | 26,355,674 | RiceDiversity 44K SNP assay, 34 trait... | 13,390 | Search for SNPs |
chr8 | 18,994,607 | 26,355,674 | RiceDiversity 44K SNP assay, 34 trait... | 630 | Search for SNPs |