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Oryza sativa QTL "AQG008" (panicle exsertion)
| QTL Accession ID | AQG008 |
|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
| Trait Symbol | PNEX |
| Trait Name | panicle exsertion |
| Published Symbol | qPEN-4 |
| Trait Synonym(s) |
PEN exs |
| Trait Category | Sterility or fertility |
| Chromosome | 4 |
| Comments |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 13,634,515-13,635,012 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 4 | 41.6-41.6 cM | View Comparative Map | |||
|
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQG008 | 4 | 41.6 | 41.6 |
Associated Markers (3)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | RG908 | RFLP | Oryza sativa | qtl_marker |
| To | RM261 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM456 | SSR | Oryza sativa Japonica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (8)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000165) | Hittalmani-S et al., 2002 (IAGP) |
| Plant Structure | (PO:0009049) | Hittalmani-S et al., 2002 (SM) |
| Plant Growth and Development Stage | (PO:0007130) | Hittalmani-S et al., 2002 (SM) |
| (PO:0007041) | Hittalmani-S et al., 2002 (SM) | |
| Growth Stage | (GRO:0007140) | Hittalmani-S et al., 2002 (SM) |
| (GRO:0007044) | Hittalmani-S et al., 2002 (SM) | |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Hittalmani-S et al., 2002 (SM) |
Database Cross-References (1)
SNPs (20)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr4 | 13,634,515 | 13,635,012 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr4 | 13,634,515 | 13,635,012 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr4 | 13,634,515 | 13,635,012 | Huang X, et al, Nat Genetics 2010 Nov... | 10 | Search for SNPs |
| chr4 | 13,634,515 | 13,635,012 | RiceDiversity 44K SNP assay, 34 trait... | 10 | Search for SNPs |
| chr4 | 13,634,515 | 13,635,012 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
