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Oryza sativa QTL "AQFW194" (days to heading)
| QTL Accession ID | AQFW194 | ||||
|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
| Trait Symbol | DTHD | ||||
| Trait Name | days to heading | ||||
| Published Symbol | |||||
| Trait Synonym(s) |
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| Trait Category | Development | ||||
| Chromosome | 7 | ||||
| Comments | This locus was found to have significant interaction with another locus, AQFW193, based on phenotypic data of the Teqing BC population (derived from crosses between the RILs and the tester, Teqing). |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 7 | 25,101,758-26,888,073 bp | View Comparative Map | |||
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| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 7 | 107.2-137.3 cM | View Comparative Map | |||
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QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQFW194 | 7 | 107.2 | 137.3 |
Associated Markers (6)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | CDO497 | RFLP | Avena sativa | qtl_marker |
| To | BCD855 | RFLP | Hordeum vulgare | qtl_marker |
| To | RM234 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | CDO405 | RFLP | Avena sativa | qtl_marker |
| To | RM336 | SSR | Oryza sativa Indica Group | qtl_marker |
| To | RM248 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000137) | Mei-H-W et al., 2005 (IAGP) |
| Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2005 (SM) |
Database Cross-References (1)
SNPs (8,491)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr7 | 25,101,758 | 26,888,073 | ~160K SNPs x 20 accessions (McNally 2... | 632 | Search for SNPs |
| chr7 | 25,101,758 | 26,888,073 | '1536 chip' - 1311 SNPs x 395 rice ac... | 9 | Search for SNPs |
| chr7 | 25,101,758 | 26,888,073 | Huang X, et al, Nat Genetics 2010 Nov... | 3,829 | Search for SNPs |
| chr7 | 25,101,758 | 26,888,073 | RiceDiversity 44K SNP assay, 34 trait... | 3,829 | Search for SNPs |
| chr7 | 25,101,758 | 26,888,073 | RiceDiversity 44K SNP assay, 34 trait... | 192 | Search for SNPs |
