QTL Accession ID | AQFW064 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | LFLG |
Trait Name | leaf length |
Published Symbol | QFll4 |
Trait Synonym(s) |
FLL flag-leaf length |
Trait Category | Anatomy |
Chromosome | 4 |
Comments | One main-effect QTL was detected based on the mid-parental heterosis (HMP=F1-MP) of individual testcross hybrids of one backcross F1 population (derived from crosses between the RILs and the tester, Teqing). Flag-leaf length was measured to evaluate leaf length and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 4 | 30,630,093-30,630,917 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 4 | 140-151.6 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFW064 | 4 | 140 | 151.6 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G379 | RFLP | Oryza sativa | qtl_marker |
To | RM255 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG214 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000135) | Mei-H-W et al., 2005 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr4 | 30,630,093 | 30,630,917 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr4 | 30,630,093 | 30,630,917 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr4 | 30,630,093 | 30,630,917 | Huang X, et al, Nat Genetics 2010 Nov... | 4 | Search for SNPs |
chr4 | 30,630,093 | 30,630,917 | RiceDiversity 44K SNP assay, 34 trait... | 4 | Search for SNPs |
chr4 | 30,630,093 | 30,630,917 | RiceDiversity 44K SNP assay, 34 trait... | 0 |