QTL Accession ID | AQFW057 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | QHd12 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 12 | ||||
Comments | One main-effect QTL was detected based on the mid-parental heterosis (HMP=F1-MP) of individual testcross hybrids of one backcross F1 population (derived from crosses between the RILs and the tester, Teqing). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 21,040,162-21,041,065 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 12 | 100.5-106.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFW057 | 12 | 100.5 | 106.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | G402 | RFLP | Oryza sativa | qtl_marker |
To | RG20 | RFLP | Oryza sativa | qtl_marker |
To | RM260 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RG91 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Mei-H-W et al., 2005 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr12 | 21,040,162 | 21,041,065 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr12 | 21,040,162 | 21,041,065 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr12 | 21,040,162 | 21,041,065 | B-Gross/J-Yulin SNP Pi-ta study in AA... | 0 | |
chr12 | 21,040,162 | 21,041,065 | Huang X, et al, Nat Genetics 2010 Nov... | 3 | Search for SNPs |
chr12 | 21,040,162 | 21,041,065 | RiceDiversity 44K SNP assay, 34 trait... | 3 | Search for SNPs |
chr12 | 21,040,162 | 21,041,065 | RiceDiversity 44K SNP assay, 34 trait... | 0 |