QTL Accession ID | AQFW004 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | DTHD | ||||
Trait Name | days to heading | ||||
Published Symbol | QHd8 | ||||
Trait Synonym(s) |
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Trait Category | Development | ||||
Chromosome | 8 | ||||
Comments | One main-effect QTL was detected based on phenotypic data of RIL population. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 8 | 13,927,893-20,650,257 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 8 | 78.7-131.4 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFW004 | 8 | 78.7 | 131.4 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C225 | RFLP | Oryza sativa | qtl_marker |
To | G2132 | RFLP | Oryza sativa | qtl_marker |
To | C1073 | RFLP | Oryza sativa | qtl_marker |
To | RM223 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ323 | RFLP | Oryza sativa | qtl_marker |
To | G2140 | RFLP | Oryza sativa | qtl_marker |
To | RM210 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000137) | Mei-H-W et al., 2005 (IAGP) |
Plant Structure | (PO:0009049) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007044) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mei-H-W et al., 2005 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr8 | 13,927,893 | 20,650,257 | ~160K SNPs x 20 accessions (McNally 2... | 1,771 | Search for SNPs |
chr8 | 13,927,893 | 20,650,257 | '1536 chip' - 1311 SNPs x 395 rice ac... | 17 | Search for SNPs |
chr8 | 13,927,893 | 20,650,257 | Huang X, et al, Nat Genetics 2010 Nov... | 17,377 | Search for SNPs |
chr8 | 13,927,893 | 20,650,257 | RiceDiversity 44K SNP assay, 34 trait... | 17,377 | Search for SNPs |
chr8 | 13,927,893 | 20,650,257 | RiceDiversity 44K SNP assay, 34 trait... | 498 | Search for SNPs |